Recent publications of our students
Yang E, Metzloff M, Langmüller AM, Clark AG, Messer PW and Champer J. A homing suppression gene drive with multiplexed gRNAs maintains high drive conversion efficiency and avoids functional resistance alleles. bioRxiv 2021.05.27.446071. (2021) doi: 10.1101/2021.05.27.446071
https://www.biorxiv.org/content/10.1101/2021.05.27.446071v1
Langmüller AM, Champer J, Lapinska S, Xie L, Metzloff M, Liu J, Xu Y, Clark AG and Messer PW. Fitness effects of CRISPR endonucleases in Drosophila melanogaster populations. bioRxiv 2021.05.13.444039. (2021) doi: 10.1101/2021.05.13.444039
https://www.biorxiv.org/content/10.1101/2021.05.13.444039v1
Wölfl B, te Rietmole H, Salvioli M, Kaznatcheev A, Thuijsman F, Brown JS, Burgering B and Staňková K. The contribution of evolutionary game theory to understanding and treating cancer. medRxiv 2020.12.02.20241703. (2021) doi: 10.1101/2020.12.02.20241703
https://www.medrxiv.org/content/10.1101/2020.12.02.20241703v3
Burny C, Nolte V, Dolezal M and Schlötterer C. Highly parallel genomic selection response in replicated Drosophila melanogaster populations with reduced genetic variation. bioRxiv 2021.04.06.438598. (2021) doi: 10.1101/2021.04.06.438598
https://www.biorxiv.org/content/10.1101/2021.04.06.438598v1.article-info
Johnson KD, Beiglböck M, Eder M, Grass A, Hermisson J, Pammer G, Polechová J, Toneian D and Wölfl B. Disease momentum: Estimating the reproduction number in the presence of superspreading. Infect. Dis. Model. (2021) doi: https://doi.org/10.1016/j.idm.2021.03.006.
https://www.sciencedirect.com/science/article/pii/S2468042721000270?via%3Dihub
Bayle V, Fiche J-B, Burny C, Platre MP, Nollmann M, Martinière A and Jaillais Y. Single-particle tracking photoactivated localization microscopy of membrane proteins in living plant tissues. Nat. Protoc. (2021) doi: 10.1038/s41596-020-00471-4
https://www.nature.com/articles/s41596-020-00471-4
Langmüller AM, Dolezal M and Schlötterer C. Fine mapping without phenotyping: Identification of selection targets in secondary Evolve and Resequence experiments. bioRxiv 2021.01.27.428395. (2021) doi: 10.1101/2021.01.27.428395
https://www.biorxiv.org/content/10.1101/2021.01.27.428395v1
Lai W-Y, Nolte V, Jakšić AM and Schlötterer C. Evolution of phenotypic variance provides insights into the genetic basis of adaption. bioRxiv 2021.01.19.427260. (2021) doi: 10.1101/2021.01.19.427260
https://www.biorxiv.org/content/10.1101/2021.01.19.427260v1
Lai W-Y and Schlötterer C. Evolution of gene expression variance during adaptation to high temperature in Drosophila. bioRxiv 2021.01.19.427270. (2021) doi: 10.1101/2021.01.19.427270
https://www.biorxiv.org/content/10.1101/2021.01.19.427270v1
Shang H, Hess J, Pickup M, Field DL, Ingvarsson PK, Liu J and Lexer C. Evolution of strong reproductive isolation in plants: broad-scale patterns and lessons from a perennial model group. Philos. Trans. R. Soc. B Biol. Sci. 375(1806), 20190544. (2020) doi: 10.1098/rstb.2019.0544
https://royalsocietypublishing.org/doi/abs/10.1098/rstb.2019.0544
Schwarz F, Wierzbicki F, Senti K-A and Kofler R. Tirant stealthily invaded natural Drosophila melanogaster populations during the last century. Mol. Biol. Evol. (2020) doi: 10.1101/2020.06.10.144378
https://academic.oup.com/mbe/advance-article/doi/10.1093/molbev/msaa308/6008717
Hsu S, Belmouaden C, Nolte V and Schlötterer C. Parallel gene expression evolution in natural and laboratory evolved populations. Mol. Ecol. mec.15649. (2020) doi: 10.1111/mec.15649
https://onlinelibrary.wiley.com/doi/full/10.1111/mec.15649
Langmüller AM, Nolte V, Galagedara R, Poupardin R, Dolezal M and Schlötterer C. Fitness effects for Ace insecticide resistance mutations are determined by ambient temperature. BMC Biol. 18(1), 157. (2020) doi: 10.1186/s12915-020-00882-5
https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-020-00882-5
Jakšić AM, Karner J, Nolte V, Hsu SK, Barghi N, Mallard F, Otte KA, Svečnjak L, Senti KA and Schlötterer C. Neuronal function and dopamine signaling evolve at high temperature in Drosophila. Mol. Biol. Evol. 37(9), 2630–2640. (2020) doi: 10.1093/molbev/msaa116
https://academic.oup.com/mbe/article/37/9/2630/5836827
Pelizzola M, Behr M, Li H, Munk A and Futschik A. Multiple haplotype reconstruction from allele frequency data. bioRxiv 2020.07.09.191924. (2020)
doi: 10.1101/2020.07.09.191924
https://www.biorxiv.org/content/10.1101/2020.07.09.191924v1.full
Weilguny L, Vlachos C, Selvaraju D and Kofler R. Reconstructing the invasion route of the P-element in Drosophila melanogaster using extant population samples. Genome Biol. Evol. (2020) doi: 10.1093/gbe/evaa190
https://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evaa190/5903738
Gutzat R, Rembart K, Nussbaumer T, Hofmann F, Pisupati R, Bradamante G, Daubel N, Gaidora A, Lettner N, Donà M, Nordborg M, Nodine M and Mittelsten Scheid O. Arabidopsis shoot stem cells display dynamic transcription and DNA methylation patterns. EMBO J. e103667. (2020) doi: 10.15252/embj.2019103667
https://www.embopress.org/doi/full/10.15252/embj.2019103667
Leung K, Ras E, Ferguson KB, Ariëns S, Babendreier D, Bijma P, Bourtzis K, Brodeur J, Bruins MA, Centurión A, Chattington SR, Chinchilla-Ramírez M, Dicke M, Fatouros NE, González-Cabrera J, Groot TVM, Haye T, … Lirakis M, ... Pannebakker BA. Next-generation biological control: the need for integrating genetics and genomics. Biol. Rev. (2020) doi: 10.1111/brv.12641
https://onlinelibrary.wiley.com/doi/full/10.1111/brv.12641
Langmüller AM and Schlötterer C. Low concordance of short-term and long-term selection responses in experimental Drosophila populations. Mol. Ecol. mec.15579. (2019) doi: 10.1101/759704
https://onlinelibrary.wiley.com/doi/abs/10.1111/mec.15579
Setter D, Mousset S, Cheng X, Nielsen R, DeGiorgio M and Hermisson J. VolcanoFinder: Genomic scans for adaptive introgression. PLoS Genet. 16(6), e1008867. (2020) doi: 10.1371/journal.pgen.1008867
https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1008867
Triqueneaux G, Burny C, Symmons O, Janczarski S, Gruffat H and Yvert G. Cell-to-cell expression dispersion of B-cell surface proteins is linked to genetic variants in humans. Commun. Biol. 3(1), 346. (2020) doi: 10.1038/s42003-020-1075-1
https://www.nature.com/articles/s42003-020-1075-1#citeas
Eriksson MC, Szukala A, Tian B and Paun O. Current research frontiers in plant epigenetics: an introduction to a Virtual Issue. New Phytol. 226, 285–288. (2020) doi:10.1111/Nph.16493
https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.16493
Mazzucco R, Nolte V, Vijayan T, Schlötterer C. Long-term dynamics among Wolbachia strains during thermal adaptation of their Drosophila melanogaster hosts. Front. Genet. 11, 482. (2020) doi:10.3389/fgene.2020.00482
https://www.frontiersin.org/articles/10.3389/fgene.2020.00482/full
Törmä L, Burny C and Schlötterer C. Reversed sex-biased mutation rates for indels and base substitutions in Drosophila melanogaster. bioRxiv 031336. (2020) doi: 10.1101/2020.04.07.029033
https://www.biorxiv.org/content/10.1101/2020.04.08.031336v1
Törmä L, Burny C, Nolte V, Senti KA and Schlötterer C. Transcription-coupled repair in Drosophila melanogaster is independent of the mismatch repair pathway. bioRxiv 029033. (2020) doi: 10.1101/2020.04.07.029033
https://www.biorxiv.org/content/10.1101/2020.04.07.029033v1
Wierzbicki F, Schwarz F, Cannalonga O and Kofler R. Generating high quality assemblies for genomic analysis of transposable elements. bioRxiv 011312. (2020) doi: 10.1101/2020.03.27.011312
https://www.biorxiv.org/content/10.1101/2020.03.27.011312v1
Pontz M and Feldman MW. Loss of genetic variation in the two-locus multiallelic haploid model. bioRxiv 981852. (2020) doi: https://doi.org/10.1101/2020.03.07.981852
https://www.biorxiv.org/content/10.1101/2020.03.07.981852v1
Burny C, Nolte V, Nouhaud P, Dolezal M and Schlötterer C. Secondary evolve and re-sequencing: an experimental confirmation of putative selection targets without phenotyping. Genome Biol. Evol. 12(3), 151–159 (2020) doi: 10.1093/gbe/evaa036
https://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evaa036/5803073
Hsu S-K, Jakšić AM, Nolte V, Lirakis M, Kofler R, Barghi N, Versace E and Schlötterer C. Rapid sex-specific adaptation to high temperature in Drosophila. eLife 9. (2020) doi: 10.7554/eLife.53237
https://elifesciences.org/articles/53237
Spitzer K, Pelizzola M and Futschik A. Modifying the chi-square and the cmh test for population genetic inference: Adapting to overdispersion. Ann. Appl. Stat. 14(1), 202–220. (2020) doi: 10.1214/19-AOAS1301
https://www.e-publications.org/ims/submission/AOAS/user/submissionFile/39844?confirm=afa966e8
Aköz G and Nordborg M. The Aquilegia genome reveals a hybrid origin of core eudicots. Genome Biol. 20(1), 256. (2019) doi: 10.1186/s13059-019-1888-8
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6883705/
Vlachos C, Burny C, Pelizzola M, Borges R, Futschik A, Kofler R and Schlötterer C. Benchmarking software tools for detecting and quantifying selection in evolve and resequencing studies. Genome Biol. 20(1), 169. (2019) doi: 10.1186/s13059-019-1770-8
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1770-8
Vlachos C and Kofler R. Optimizing the power to identify the genetic basis of complex traits with evolve and resequence studies. Mol. Biol. Evol. 36(12), 2890–2905. (2019) doi: 10.1093/molbev/msz183
https://academic.oup.com/mbe/advance-article/doi/10.1093/molbev/msz183/5545983
Christodoulaki E, Barghi N and Schlötterer C. Distance to trait optimum is a crucial factor determining the genomic signature of polygenic adaptation. bioRxiv 721340. (2019) doi: 10.1101/721340
https://www.biorxiv.org/content/10.1101/721340v1
Lirakis M and Magalhães S. Does experimental evolution produce better biological control agents? A critical review of the evidence. Entomol. Exp. Appl. 167(7), eea.12815. (2019) doi: 10.1111/eea.12815
https://onlinelibrary.wiley.com/doi/10.1111/eea.12815
Felkel S, Vogl C, Rigler D, Dobretsberger V, Chowdhary BP, Distl O, Fries R, Jagannathan V, Janečka JE, Leeb T, Lindgren G, McCue M, Metzger J, Neuditschko M, Rattei T, Raudsepp T, Rieder S, … Wallner B. The horse Y chromosome as an informative marker for tracing sire lines. Sci. Rep. 9(1), 6095. (2019) doi: 10.1038/s41598-019-42640-w
https://www.nature.com/articles/s41598-019-42640-w
Durmaz E, Rajpurohit S, Betancourt N, Fabian DK, Kapun M, Schmidt P and Flatt T. A clinal polymorphism in the insulin signaling transcription factor foxo contributes to life-history adaptation in Drosophila. Evolution 73(9), 1774–1792. (2019) doi: 10.1111/evo.13759
https://onlinelibrary.wiley.com/doi/abs/10.1111/evo.13759
Felkel S, Wallner B, Chuluunbat B, Yadamsuren A, Faye B, Brem G, Walzer C and Burger PA. A first Y-chromosomal haplotype network to investigate male-driven population dynamics in domestic and wild Bactrian camels. Front. Genet. 10, 423. (2019) doi: 10.3389/fgene.2019.00423
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6537670/
Fages A, … Felkel S, Wallner B, … Orlando L. Tracking five millennia of horse management with extensive ancient genome time series. Cell 177(6), 1419-1435.e31. (2019) doi: 10.1016/j.cell.2019.03.049
https://www.cell.com/cell/fulltext/S0092-8674(19)30384-8
Howie JM, Mazzucco R, Taus T, Nolte V and Schlötterer C. DNA motifs are not general predictors of recombination in two Drosophila sister species. Genome Biol. Evol. 11(4), 1345–1357. (2019) doi: 10.1093/gbe/evz082
https://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evz082/5454723
Höllinger I, Pennings PS and Hermisson J. Polygenic adaptation: From sweeps to subtle frequency shifts. PLoS Genet. 15(3), e1008035. (2019) doi: 10.1371/journal.pgen.1008035
https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1008035
Bergman J and Eyre-Walker A. Does adaptive protein evolution proceed by large or small steps at the amino acid level? Mol. Biol. Evol. (2019) doi: 10.1093/molbev/msz033
https://academic.oup.com/mbe/advance-article/doi/10.1093/molbev/msz033/5319976?guestAccessKey=fa3fff8d-08a6-40e9-a3e3-cc25065b22ec
Barghi N, Tobler R, Nolte V, Jakšić AM, Mallard F, Otte KA, Dolezal M, Taus T, Kofler R and Schlötterer C. Genetic redundancy fuels polygenic adaptation in Drosophila. PLOS Biol. 17(2), e3000128. (2019) doi: 10.1371/journal.pbio.3000128
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3000128
Hsu S-K, Jakšić AM, Nolte V, Barghi N, Mallard F, Otte KA, Schlötterer C. A 24 h age difference causes twice as much gene expression divergence as 100 generations of adaptation to a novel environment. Genes 10(2), 89. (2019) doi: 10.3390/genes10020089
https://www.mdpi.com/2073-4425/10/2/89
Rogers J, Raveendran M, Harris RA, Mailund T, Leppälä K, Athanasiadis G, Schierup MH, Cheng J, Munch K, Walker JA, Konkel MK, Jordan V, Steely CJ, Beckstrom TO, Bergey C, Burrell A, Schrempf D, … Consortium BGA. The comparative genomics and complex population history of Papio baboons. Sci. Adv. 5(1), eaau6947. (2019) doi: 10.1126/sciadv.aau6947
http://advances.sciencemag.org/content/5/1/eaau6947
Liu J, Champer J, Langmüller AM, Liu C, Chung J, Reeves R, Luthra A, Lee YL, Vaughn AH, Clark AG and Messer PW. Maximum likelihood estimation of fitness components in experimental evolution. Genetics genetics.301893.2018. (2019) doi: 10.1534/genetics.118.301893
http://www.genetics.org/content/early/2019/01/24/genetics.118.301893
Fabian DK, Garschall K, Klepsatel P, Santos-Matos G, Sucena É, Kapun M, Lemaitre B, Schlötterer C, Arking R and Flatt T. Evolution of longevity improves immunity in Drosophila. Evol. Lett. (2018) doi: 10.1002/evl3.89
https://onlinelibrary.wiley.com/doi/full/10.1002/evl3.89
Bertl J, Ringbauer H and Blum MGB. Can secondary contact following range expansion be distinguished from barriers to gene flow? PeerJ 6, e5325. (2018) doi: 10.7717/peerj.5325
https://peerj.com/articles/5325/
Vlachos C and Kofler R. MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies. PLOS Comput. Biol. 14(8), e1006413. (2018) doi: 10.1371/journal.pcbi.1006413
http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006413
Mallard F, Nolte V, Tobler R, Kapun M and Schlötterer C. A simple genetic basis of adaptation to a novel thermal environment results in complex metabolic rewiring in Drosophila. Genome Biol. 19(1), 119. (2018) doi: 10.1186/s13059-018-1503-4
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6100727/
Filiault DL, Ballerini ES, Mandáková T, Aköz G, Derieg NJ, Schmutz J, Jenkins J, Grimwood J, Shu S, Hayes RD, Hellsten U, Barry K, Yan J, Mihaltcheva S, Karafiátová M, Nizhynska V, Kramer EM, … Nordborg M. The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history. eLife 7. (2018) doi: 10.7554/eLife.36426
https://elifesciences.org/articles/36426
Bergman J, Betancourt AJ and Vogl C. Transcription-associated compositional skews in Drosophila genes. Genome Biol. Evol. 10(1), 269–275. (2018) doi: 10.1093/gbe/evx200
http://europepmc.org/articles/PMC5786239
Bergman J, Schrempf D, Kosiol C and Vogl C. Inference in population genetics using forward and backward, discrete and continuous time processes. J. Theor. Biol. 439, 166–180. (2018) doi: 10.1016/j.jtbi.2017.12.008
https://www.sciencedirect.com/science/article/pii/S0022519317305477?via%3Dihub
Felkel S, Vogl C, Rigler D, Jagannathan V, Leeb T, Fries R, Neuditschko M, Rieder S, Velie B, Lindgren G, Rubin C-J, Schlötterer C, Rattei T, Brem G and Wallner B. Asian horses deepen the MSY phylogeny. Anim. Genet. 49(1), 90–93. (2018) doi: 10.1111/age.12635
https://onlinelibrary.wiley.com/doi/abs/10.1111/age.12635
Gaunitz C, Fages A, Hanghøj K, Albrechtsen A, Khan N, Schubert M, Seguin-Orlando A, Owens IJ, Felkel S, Bignon-Lau O, de Barros Damgaard P, Mittnik A, Mohaseb AF, Davoudi H, Alquraishi S, Alfarhan AH, Al-Rasheid KAS, … Orlando L. Ancient genomes revisit the ancestry of domestic and Przewalski’s horses. Science 360(6384):111-114. (2018)
https://science.sciencemag.org/content/360/6384/111.long
Futschik A, Taus T and Zehetmayer S. An omnibus test for the global null hypothesis. Stat. Methods Med. Res. 96228021876832 (2018) doi: 10.1177/0962280218768326
http://journals.sagepub.com/doi/pdf/10.1177/0962280218768326
Horváth B, Betancourt AJ and Kalinka AT. A novel method for quantifying the rate of embryogenesis uncovers considerable genetic variation for the duration of embryonic development in Drosophila melanogaster. BMC Evol. Biol. 16(1), 1–14. (2016) doi: 10.1186/s12862-016-0776-z
https://bmcevolbiol.biomedcentral.com/articles/10.1186/s12862-016-0776-z
Horváth B and Kalinka AT. The genetics of egg retention and fertilization success in Drosophila: One step closer to understanding the transition from facultative to obligate viviparity. Evolution. 72(2), 318–336. (2018) doi: 10.1111/evo.13411
https://onlinelibrary.wiley.com/doi/full/10.1111/evo.13411
Kofler R, Senti K-A, Nolte V, Tobler R and Schlötterer C. Molecular dissection of a natural transposable element invasion. Genome Res. gr.228627.117. (2018) doi: 10.1101/gr.228627.117
https://genome.cshlp.org/content/28/6/824
Lirakis M, Dolezal M and Schlötterer C. Redefining reproductive dormancy in Drosophila as a general stress response to cold temperatures. J. Insect Physiol. 107, 175–185. (2018) doi: 10.1016/j.jinsphys.2018.04.006
https://www.sciencedirect.com/science/article/pii/S0022191017304833?via%3Dihub
Mallard F, Jakšić AM and Schlötterer C. Contesting the evidence for non-adaptive plasticity. Nature 555(7698), E21–E22. (2018) doi: 10.1038/nature25496
https://www.nature.com/articles/nature25496
Pontz M, Hofbauer J and Bürger R. Evolutionary dynamics in the two-locus two-allele model with weak selection. J. Math. Biol. 76(1–2), 151–203. (2018) doi: 10.1007/s00285-017-1140-7
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5754571/
Brachi B, Filiault D, Darme P, Mentec M Le, Kerdaffrec E, Rabanal FA, Anastasio A, Box M, Duncan S, Morton T, Novikova P, Perisin M, Tsuchimatsu T, Woolley R, Yu M, Dean C, Nordborg M, … Bergelson J. Plant genes influence microbial hubs that shape beneficial leaf communities. bioRxiv 181198. (2017) doi: 10.1101/181198
https://www.biorxiv.org/content/early/2017/08/29/181198
Balao F, Trucchi E, Wolfe TM, Hao BH, Lorenzo MT, Baar J, Sedman L, Kosiol C, Amman F, Chase MW, Hedrén M and Paun O. Adaptive sequence evolution is driven by biotic stress in a pair of orchid species (Dactylorhiza) with distinct ecological optima. Mol. Ecol. 26(14), 3649–3662. (2017) doi: 10.1111/mec.14123
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5518283/
Barghi N, Tobler R, Nolte V and Schlötterer C. Drosophila simulans: A species with improved resolution in evolve and resequence studies. G3 7(7), 2337–2343. (2017) doi: 10.1534/g3.117.043349
http://europepmc.org/articles/PMC5499140
Bertl J, Ewing G, Kosiol C and Futschik A. Approximate maximum likelihood estimation for population genetic inference. Stat. Appl. Genet. Mol. Biol. 16(5–6), 387–405. (2017) doi: 10.1515/sagmb-2017-0016
https://www.degruyter.com/view/j/sagmb.2017.16.issue-5-6/sagmb-2017-0016/sagmb-2017-0016.xml
Durvasula A*, Fulgione A*, Gutaker RM, Alacakaptan SI, Flood PJ, Neto C, Tsuchimatsu T, Burbano HA, Picó FX, Alonso-Blanco C and Hancock AM. African genomes illuminate the early history and transition to selfing in Arabidopsis thaliana. Proc. Natl. Acad. Sci. 114(20), 5213–5218. (2017), doi: 10.1073/pnas.1616736114 *co-first authors
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5441814/
Fulgione A, Koornneef M, Roux F, Hermisson J and Hancock AM. Madeiran Arabidopsis thaliana reveals ancient long-range colonization and clarifies demography in Eurasia. Mol. Biol. Evol. 35(3), 564–574. (2017) doi: 10.1093/molbev/msx300
http://europepmc.org/articles/PMC5850838
Gómez-Sánchez D and Schlötterer C. ReadTools : A universal toolkit for handling sequence data from different sequencing platforms. Mol. Ecol. Resour. (2017) doi: 10.1111/1755-0998.12741
https://onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.12741
Höllinger I and Hermisson J. Bounds to parapatric speciation: A Dobzhansky–Muller incompatibility model involving autosomes, X chromosomes, and mitochondria. Evolution. 71(5), 1366–1380. (2017) doi: 10.1111/evo.13223
https://onlinelibrary.wiley.com/doi/abs/10.1111/evo.13223
Jakšić AM, Kofler R and Schlötterer C. Regulation of transposable elements: Interplay between TE-encoded regulatory sequences and host-specific trans-acting factors in Drosophila melanogaster. Mol. Ecol. 26(19), 5149–5159. (2017) doi: 10.1111/mec.14259
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5012396/
Lee CR, Svardal H, Farlow A, Exposito-Alonso M, Ding W, Novikova PY, Alonso-Blanco C, Weigel D and Nordborg M. On the post-glacial spread of human commensal Arabidopsis thaliana. Nat. Commun. 8, 14458. (2017) doi: 10.1038/ncomms14458
https://www.nature.com/articles/ncomms14458
Novikova PY, Tsuchimatsu T, Simon S, Nizhynska V, Voronin V, Burns R, Fedorenko OM, Holm S, Säll T, Prat E, Marande W, Castric V, Nordborg M and Irwin D. Genome sequencing reveals the origin of the allotetraploid Arabidopsis suecica. Mol. Biol. Evol. 34(4), 957–968. (2017) doi: 10.1093/molbev/msw299
http://europepmc.org/articles/PMC5400380
Pisupati R, Reichardt I, Seren Ü, Korte P, Nizhynska V, Kerdaffrec E, Uzunova K, Rabanal FA, Filiault DL and Nordborg M. Verification of Arabidopsis stock collections using SNPmatch, a tool for genotyping high-plexed samples. Sci. Data 4, 170184. (2017) doi: 10.1038/sdata.2017.184
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5744633/
Rabanal FA, Nizhynska V, Mandáková T, Novikova PY, Lysak MA, Mott R and Nordborg M. Unstable inheritance of 45S rRNA genes in Arabidopsis thaliana. G3 7(4), 1201–1209. (2017) doi: 10.1534/g3.117.040204
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5386868/
Schrempf D and Hobolth A. An alternative derivation of the stationary distribution of the multivariate neutral Wright–Fisher model for low mutation rates with a view to mutation rate estimation from site frequency data. Theor. Popul. Biol. 114, 88–94. (2017) doi: 10.1016/j.tpb.2016.12.001
https://www.sciencedirect.com/science/article/pii/S004058091630106X?via%3Dihub
Taus T, Futschik A and Schlötterer C. Quantifying selection with Pool-Seq time series data. Mol. Biol. Evol. 34(11), 3023–3034. (2017) doi: 10.1093/molbev/msx225
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